Monday, July 1, 2013

Microscopic "Tuning Forks" Help Determine Effectiveness of Antibiotics

That's nice that a new technique is developed to measure/observe bacteria, but what's with all that bullshit about rushed bacterial infection?

PR idiots.

As a clinical (critical care, if you care to know) physician, I too am a bit puzzled by the description.

Patients in septic shock are very sick and the prescription of antibiotics is a delicate subject....antibiotics need to be started within a few hours of diagnosis, and getting it wrong (prescribing an antibiotic to which the bacteria is resistant) and the patient has a 50% increase in mortality. To this end we use the broadest spectrum antibiotics available, and most hospitals develop an "Antibiogram [wikipedia.org]" specific for their institution [nih.gov] and their pt population. These antibiotics are so powerful, it is rare, but not unheard of, for organisms to be resistant to them.

The process goes like this:

Pt is admitted to an ICU

Cultures of all likely sources (urine, lung, blood, CSF, abscess fluid) are obtained

Antibiotics are started (sometimes before the cultures are drawn, but ideally after), as well as other therapies

Over the next few days the antibiotics are "De-escalated" as dictated by the cultures (see below)

Hopefully the pt recovers and their care is down-graded and ultimately discharged

The cultures [wikipedia.org] are sent to the lab after being draw and in a process [wikipedia.org] that (time-wise) parallels the above:

The sample is extracted from the specimen container and are plated [youtube.com] on a growth medium or placed in a broth

They are allowed to grow for (around) 24 hours

The plates are examined to determine if anything actually grew (may take up to 3 days for blood)

If something grew, two processes happen:

The culture is sent through a variety of tests [youtube.com] (gram-stain, etc) to determine the species of bacteria which will dictate the next step.

The specimen is then re-suspended in a culture medium and plated and allowed to grow in the presence of antibiotics [youtube.com] thus yielding that particular organisms antibiogram

A you can see, there really isn't anywhere to rush the process. And I would be very interested to see how they can speed this up with their technology....the who purpose of the plating is to amplify the bacteria from the milieu of the body fluids and to find the dominant organism growing.

In addition, some cultures are already "contaminated" with body flora (e.g. upper respiratory and stool) and the purpose of the culture is to amplify pathological bacteria from the benign-normal flora.

Longer video that gives a better front to back description [youtube.com]

Source: http://rss.slashdot.org/~r/Slashdot/slashdotScience/~3/at5QnRwKHc8/story01.htm

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